Variant Database

As of Jan 29, 2020 (cpi28 relaese), datasets generated from pipeline version v2.0 and v2.1 have been dropped from the database in favor of the newer pipeline versions v2.3 and v2.38. Those that would still like to access the older pipeline versions can do on a request basis. Or can request to their data reanalyzed using newer versions of the pipeline.

We've introduced a more efficient way of downloading the alignment files without having to download the entire BAM by focusing on the variant of interest. We've added a packaged download of all the needed files (VCF, BAM, indexes) for offline viewing. The original BAM is truncated to include 1000 bps before the start coordinate and 1000 bps after the end coordinate of the variant. These files can be found in the 'Datasets' section under the heading of "Variant alignment files". Rather than waiting for hours/days, you can download in seconds/minutes.